GDL

Journal from gdlhub / 2021-01-20 15:18:14
By : Lala Septem Riza, Farhan Dhiyaa Pratama, Erna Piantari, Mahmoud Fahsi, Telkomnika
Created : 2021-01-08, with 1 files

Keyword : Apache Spark Streaming; DNA; genomic repeats; human genom; string matching;
Url : http://journal.uad.ac.id/index.php/TELKOMNIKA/article/view/14883
Document Source : web

Genomic repeats, i.e., pattern searching in the string processing process to find repeated base pairs in the order of Deoxyribonucleic Acid (DNA), requires a long processing time. This research builds a big-data computational model to look for patterns in strings by modifying and implementing the Boyer-Moore algorithm on Apache Spark Streaming for human DNA sequences from the Ensemble site. Moreover, we perform some experiments on cloud computing by varying different specifications of computer clusters with involving datasets of human DNA sequences. The results obtained show that the proposed computational model on Apache Spark Streaming is faster than standalone computing and parallel computing with multicore. Therefore, it can be stated that the main contribution in this research, which is to develop a computational model for reducing the computational costs, has been achieved.

Give Comment ?#(0) | Bookmark

Property	Value
Publisher ID	gdlhub
Organization	Telkomnika
Contact Name	Herti Yani, S.Kom
Address	Jln. Jenderal Sudirman
City	Jambi
Region	Jambi
Country	Indonesia
Phone	0741-35095
Fax	0741-35093
Administrator E-mail	elibrarystikom@gmail.com
CKO E-mail	elibrarystikom@gmail.com